Opinion
Correlation of coliform bacteria's resistome phenotype and genotype in municipal sewage is made possible by minion nano pore sequencing
Author(s): Paisley Williams*
The risk assessment of the acquisition of ambient Antibiotic Resistance Genes (ARGs) by pathogenetic populations during treatment is attracting more and more attention in Wastewater Treatment Facilities (WWTPs), which serve as the interface between human society and the natural environment. However, due to a lack of reliable Resistome profiling techniques, genotype and resistance phenotype are still insufficiently associated in human pathogens found in sewage samples. The resistance genes of Multiple Antibiotic Resistant (MAR) coliform bacteria, a frequent indicator of human enteric pathogens in sewage samples, were quantified here using Minion sequencing. Within 30 hours of collecting the samples, our pipeline could produce the results, and the Resistome quantification was accurate and comparable to that based on the Illumina platform. Long Nano pore reads also facilitated the g.. Read More»
DOI:
10.37532/puljem.22.4(1)
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